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Journal of Virology, March 2008, p. 2330-2338, Vol. 82, No. 5
0022-538X/08/$08.00+0 doi:10.1128/JVI.02327-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Department of Microbiology and Immunology,1 Jefferson Vaccine Center, Thomas Jefferson University, Philadelphia, Pennsylvania2
Received 26 October 2007/ Accepted 12 December 2007
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The RV G, which is organized as a trimer, is the sole protein exposed on the surface of the virion. RV G interacts with cellular receptors (14, 17, 32, 33), mediates pH-dependent fusion, and promotes viral entry from a peripheral site into the nervous system (19). Moreover, RV G is involved in the transsynaptic spread within the central nervous system (3, 7, 16). Although RV pathogenicity is a multigenic trait (10), RV G is the major contributor to the pathogenicity of a particular RV (5, 6, 10, 15, 21, 23, 29, 30, 34). The efficient interaction of RV G with putative host cellular receptors can promote effective virus uptake, resulting in increased virulence. Pathogenic RVs reportedly use different receptors and routes of entry than nonpathogenic derivatives (3, 16). Differences in the distributions of various RV strains in the brain are determined at least in part by the RV G (35), and the RV G's of pathogenic strains have been shown to accelerate virus internalization (5, 10).
In addition to its role in the virus-receptor interaction, G can trigger apoptosis, as observed with nonpathogenic RV strains in which G expression leads to the attenuation of the virus, probably through the induction of the immune response and the premature death of the host cells (9, 25). Pathogenic RV strains express lower levels of G than nonpathogenic strains and induce less or no apoptosis (24, 36).
Nevertheless, the pathogenicity of RV is not determined exclusively by G, as indicated by the incomplete recovery of the pathogenic phenotype when the G of a nonpathogenic RV is exchanged with that of a pathogenic RV (10, 23, 31).
The virus replication rate is another important factor in RV pathogenesis. In general, pathogenic RV strains replicate at a lower rate than attenuated RV strains (for a review, see reference 28). The RV M plays a regulatory role in viral transcription and replication (11, 12), and with the deletion of the M gene resulting in a 500,000-fold reduction in viral production (21), M is also important for viral budding. Our previous studies have implicated RV M in the pathogenicity of the highly pathogenic SB strain of RV (10), although direct evidence for the role of RV M in pathogenesis has been lacking.
To further investigate the role of G and M in viral pathogenicity, we constructed chimeric recombinant viruses by exchanging the G and M genes of the attenuated SN strain with those of the highly pathogenic SB strain. We showed that the pathogenicity of the SN parental strain was significantly increased after the introduction of the RV G from the pathogenic SB strain. Moreover, the pathogenicity was further increased when both G and M from SB were introduced into SN, and this step was associated with a decrease in the rate of viral RNA synthesis. In addition, the exchange of the M and G genes in SN for the corresponding genes from SB led to more efficient cell-to-cell spread, probably through the combined action of G and M.
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The SN strain of RV was derived from the SAD B19 cDNA clone (20, 23). The SB strain was rescued from a cDNA clone derived from the silver-haired-bat-associated RV strain SHBRV-18 (10). Virus stocks in BSR cells were prepared at 34°C using Opti-pro serum-free medium (Invitrogen, Carlsbad, CA) supplemented with 4 µM L-glutamine.
Virus titration. NA cells were grown for 2 days, and monolayers were infected with virus in 10-fold serial dilutions. Forty-eight hours postinfection (pi), cells were fixed with 80% acetone and stained with fluorescein isothiocyanate (FITC)-labeled RV N-specific antibody (Centocor, Horsham, PA). Virus titers in triplicate samples were determined using a fluorescence microscope.
Infection of mice. Five- to six-week-old female Swiss Webster mice were purchased from Taconic Farms (Germantown, NY). Groups of 10 mice were infected intramuscularly (i.m.) in the gastrocnemius muscle with 3 x 104 infectious virus particles in 100 µl of phosphate-buffered saline (PBS). Mice were observed daily for 21 days for clinical signs of rabies. Moribund mice were euthanized. All animal experiments were performed according to Institutional Animal Care and Use Committee-approved protocols (Animal Welfare Assurance no. A3085-01). Statistical analysis was performed using two-way analysis of variance (ANOVA) with Bonferroni posttests.
Construction of chimeric RV cDNA clones. cDNA clones of the SN and SB RV strains were used to construct chimeric viruses (10, 20, 23). To replace the G gene of SN with that from SB, a 1.6-kb fragment containing the SB G open reading frame was amplified using Vent polymerase (New England Biolabs, Ipswich, MA), and DraI and NheI restriction sites were introduced upstream and downstream of the G gene by using primers 5'Dra+G (5'-CCCTTTAAAAAGATGATCCCCCAGGCTCTTCTG-3'; the DraI restriction site is underlined, and the start codon is in boldface) and 3'G+Nhe (5'-ATAGCTAGCTCACATCCCGGTCTCACTTT-3'; the NheI restriction site is underlined, and the stop codon is in boldface). The fragment was digested with DraI and NheI and cloned into pSN predigested with SmaI and NheI. The resulting plasmid was designated pSN-BG.
The SB M gene was introduced into pSN at a KpnI restriction site generated upstream of the RV M gene start signal sequence by using the QuikChange site-directed mutagenesis kit according to the protocol of the manufacturer (Stratagene, La Jolla, CA) and primers 5'KSN (5'-CCTCTAGACAATAAAATCCGAGAGGTACCAAAGTCAACATGAAAAAAAC-3'; the KpnI restriction site is underlined) and 3'KSN (5'-GTTTTTTTCATGTTGACTTTGGTACCTCTCGGATTTTATTGTCTAGAGG-3'; the KpnI restriction site is underlined). In the next step, two DNA fragments were synthesized. The nucleotide sequence comprising the SB M gene was PCR amplified using Vent polymerase and primers 5'Kpn+P+BM (5'-ATAGGTACCAAAGTCAACATGAAAAAAACAGGCAACACCACTGATAAG-3'; the KpnI restriction site is underlined) and 3'Nru+M (5'-AATCGCGACTATTCCAGAAGCACTGAAGA-3'; the NruI restriction site is underlined, and the stop codon is in boldface). The fragment containing the pseudogene and the RV M-G intergenic region was amplified, and NruI and XmaI restriction sites were introduced upstream and downstream of the sequence by using primers 5'NruI+SN-M (5'-AATCGCGATATATCCCGCAAATTTATCAC-3'; the NruI restriction site is underlined) and 3'Xma-SN-M (5'-CATCTTCCCGGGGTCTTT-3'; the XmaI restriction site is underlined). The two DNA fragments were ligated utilizing the NruI site, digested with KpnI and XmaI, and cloned into pSN predigested with KpnI and XmaI. The resulting plasmid was designated pSN-BM.
To construct the chimeric SN virus containing the M and G from SB, the fragment containing the SB M and G open reading frames and the intergenic sequence was amplified using Vent polymerase, the KpnI and NheI restriction sites were introduced upstream and downstream of the M and G genes by using primer pair 5'Kpn+P+BM and 3'G+Nhe, and the fragment was digested with KpnI and NheI and cloned into pSN predigested with KpnI and NheI. The resulting plasmid was designated pSN-BMBG.
To exchange the sequence of the CD of SB G with the corresponding SN sequence, several PCRs were performed. First, half of the sequence encoding the SN G CD was introduced into the region encoding the SB G ectodomain and the transmembrane domain by using primers S3-2F (5'-AGGCTCTTCTGTTTGTGC-3') and RP 520 (5'-CGATCTTCTTAATAACATGTTGTAGAAGAGTCAATCGATCAGAACCTACGCAACACAATCTCAGAGGGACAGGGAGGG AGGTGTCAGTCA-3'; the sequence corresponding to the SB transmembrane domain is underlined). The PCR product was used as a template to introduce the other half of the sequence encoding the SN CD by using primer pair RT-4F (5'-TCCTCTACCTACTGCCCAACTA-3') and RP 521 (5'-GGGAGGTGTCAGTCACTCCCCAAAGCGGGAAGATCATATCTTCATGGGAATCACACA AGAGTGGGGGTGAGACCAGACTGTAA-3'; the stop codon is in boldface). The XmaI and NheI restriction sites were introduced upstream and downstream of the PCR fragment by using primer pair 5'Xma-G (5'-CAAACTCAAGCTATGCGGA-3') and RP 522 (5'-TTAAAGCTAGCTTACAGTCTGGTCT-3'). The fragment was digested with XmaI and NheI and cloned into predigested XmaI and NheI sites in pSN-BG. The resulting plasmid was designated pSN-BG NCD.
Virus rescue from cDNA clones. Recombinant viruses were rescued as described previously (1, 28). Briefly, BSR-T7 cells were transfected using a calcium phosphate transfection kit (Stratagene, La Jolla, CA) with a full-length cDNA plasmid and plasmids encoding RV N, P, G, and L. After 3 days, supernatants were transferred onto BSR cells and incubated for another 3 days. Cells were examined for rescued virus by immunofluorescence staining with FITC-labeled RV N-specific antibody (Centocor, Inc.). Supernatants from virus-positive cultures were used to produce virus stock in BSR cells. Sequences of recovered viruses were confirmed by sequencing of reverse transcriptase PCR (RT-PCR) fragments.
Single- and multistep growth assays. NA cell monolayers were infected at a multiplicity of infection (MOI) of 0.01 for multistep growth curves and at an MOI of 5 for single-step growth curves. After 1 h of incubation at 37°C, the inoculum was removed, cells were washed twice with PBS, and the cell cultures were replenished with RPMI 1640 medium with 0.2% bovine serum albumin (BSA) and incubated at 34°C. Supernatants were harvested at the time points indicated in the figures, and virus titers were determined. Immunofluorescent staining was used to ascertain that after infection at an MOI of 5, 100% of the cells were infected at 24 h pi.
RNA analysis and quantitative PCR. Total RNA from NA cells infected at an MOI of 5 was isolated at 8, 24, and 48 h pi by using the RNeasy mini kit according to the protocol of the manufacturer (Qiagen, Valencia, CA). Reverse transcription and quantitative PCR were performed as described previously (8). Briefly, cDNA was synthesized using the Omniscript RT kit (Qiagen). Oligo(dT) was used as a primer for mRNA transcription, a specific primer was used for genomic RNA, and a hexanucleotide mix (Roche Applied Science, Indianapolis, IN) was used for the reference mouse 18S rRNA. Quantitative PCR was performed in a LightCycler 1.5 system with software version 3.5.3 (Roche) using a DyNAmo probe (New England Biolabs). Sequences of primers and probes for 18S rRNA and the SN backbone viruses, as well as the reaction conditions, have been described previously (8). The primer pair SB sense (5'-AGGAAAAGCCCCTGACTTG-3') and SB antisense (5'-TGCTCCCTCAAAGAACTGC-3') and the SB probe (6-carboxyfluorescein-5'-GCTCGACCCTGATGATGTATGCTCTTATCT-3'-6-carboxytetramethylrhodamine) were used for SB virus. RNA was quantitatively analyzed using the comparative threshold cycle method. Statistical differences among groups at each time point were analyzed using one-way ANOVA followed by Newman-Keuls multiple-comparison tests.
Flow cytometry. Monolayers of NA cells grown in six-well plates were infected at an MOI of 5 and incubated for 48 h at 34°C. Cells were washed three times with PBS and dissociated using a cell stripper (MEDIATECH, Inc.). After centrifugation, cells were resuspended and fixed with 4% paraformaldehyde for 20 min at room temperature. Cells were washed twice with PBS, blocked with PBS containing 1% BSA and 10 mM glycine for 1 h, and incubated with rabbit anti-RV G antibody (1:2,000) followed by Alexa Fluor 488-conjugated goat anti-rabbit antibody (Invitrogen; 1:500). Flow cytometry was performed on an Epics XL flow cytometer (Beckman Coulter, Fullerton, CA). Results were analyzed using FlowJo software.
Western blot analysis. Western blotting was performed as described previously (18). Briefly, NA cells grown in T25 tissue culture flasks were infected at an MOI of 5, incubated for 48 h at 34°C, and lysed with lysis buffer (10 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1% Triton X-100, 0.5% sodium deoxycholate). After the lysates were mixed with an equal volume of 2x loading buffer (100 mM Tris-HCl [pH 6.8], 200 mM dithiothreitol, 2% SDS, 0.1% bromophenol blue, 10% glycerol), the proteins were resolved by sodium dodecyl sulfate-12% polyacrylamide gel electrophoresis and transferred onto a polyvinylidene difluoride membrane (Osmonics, Inc., Minnetonka, MN). The membrane was incubated with a mixture of polyclonal rabbit antibodies directed against RV M (generated by B. Dietzschold, Thomas Jefferson University) and anti-actin affinity-isolated antigen-specific antibody (Sigma, St. Louis, MO), followed by Alexa Fluor 555-conjugated anti-rabbit immunoglobulin G (IgG; Invitrogen). Proteins were detected using a molecular imager (Typhoon 9400; Amersham Bioscience, Pittsburgh, PA).
Virus spread assay. Confluent Vero cells were infected at an MOI of 0.01 for 2 h at 37°C. After the removal of inocula, cells were washed twice with PBS, overlaid with semisolid agar medium (equal volumes of 2% low-melting-point agar and 2x Dulbecco modified essential medium with 0.4% BSA), and incubated at 34°C. At the times indicated in the figures, agar was removed and cells were washed with PBS, fixed with 80% acetone, and stained with FITC-labeled RV N-specific antibody (Centocor, Inc). Fluorescent foci were detected using a fluorescence microscope equipped with a video camera, and the sizes of the foci were calculated using Spot advanced software. Statistical differences among groups at each time point were analyzed using one-way ANOVA followed by Newman-Keuls multiple-comparison tests.
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FIG. 1. Schematic of chimeric recombinant RVs with components of the highly pathogenic SB strain (gray boxes) and the nonpathogenic SN strain (white boxes). SN-BM, SN-BG, and SN-BMBG were constructed by the replacement of the M or G gene or both M and G genes in the SN backbone with the corresponding genes of SB. LS, leader sequence; TS, trailer sequence; , pseudogene.
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FIG. 2. Rates of hind-limb paralysis (A) and mortality (B) among adult mice infected with recombinant RVs. Groups of 10 Swiss Webster mice were infected i.m. (in the gastrocnemius muscle) with 3 x 104 focus-forming units and observed daily for signs of rabies. Moribund animals were euthanized. Data are the means (± standard errors [SE]) of results from three independent experiments.
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FIG. 3. Single-step (A) and multistep (B) growth curves for the chimeric recombinant viruses SN-BM, SN-BG, and SN-BMBG and the parental viruses SN and SB. NA cells were infected in duplicate at an MOI of 5 (A) or 0.01 (B), and the titers of virus in the tissue culture supernatants were determined at the indicated time points. Data are the means (± SE) of results from three independent experiments. FFU, focus-forming units.
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Quantitative RT-PCR analysis of viral transcription and replication in NA cells. To investigate whether the differences in viral growth kinetics are determined at the RNA level, we performed quantitative RT-PCR using RNA isolated from SN-BM-, SN-BG-, SN-BMBG-, SN-, or SB-infected NA cells. Comparison of the relative amounts of viral mRNA or genomic RNA produced in SN-BM-, SN-BG-, SN-BMBG-, or SB-infected cells with those produced in SN-infected cells revealed the lowest amounts of both viral mRNA and genomic RNA in SB-infected cells at all time points, except 8 h pi for viral mRNA (Fig. 4). At 48 h pi, levels of viral mRNA and genomic RNA in SB-infected cells were 6.9- and 16.7-fold lower, respectively (P < 0.001), than those detected in SN-infected cells. While the levels of mRNA and genomic RNA produced by SN-BG at 48 h pi were only 1.3- and 1.2-fold lower, respectively (P < 0.01), than those produced by SN, viral mRNA and genomic RNA levels produced in SN-BMBG-infected cells were 2- and 3.7-fold lower than the corresponding RNA levels produced by SN at 48 h pi (P < 0.001). In contrast, mRNA and genomic RNA levels in SN-BM-infected cells were 1.5 times higher than those in SN-infected cells (P < 0.001). These data suggest that RV G and RV M are involved in the regulation of viral RNA transcription and replication by an as-yet-unknown mechanism and further support the notion that the viral replication rate observed in vitro correlates inversely with pathogenicity.
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FIG. 4. Transcription of viral mRNA (A) and replication of viral genomic RNA (B) in NA cells infected with the chimeric viruses SN-BM, SN-BG, and SN-BMBG and the parental virus SB relative to those in cells infected with SN (the quantity of SN RNA was taken as 100%). Cells were infected at an MOI of 5, and total RNA was isolated at the indicated time points. A fragment of RV N mRNA or the N gene of genomic RV RNA was reverse transcribed and subjected to quantitative PCR analysis. The data were normalized using 18S rRNA as an internal control and analyzed using the comparative threshold cycle method. Data are means (± standard deviations) of values for triplicate samples in one of two independent experiments with superimposable results. gRNA, genomic RNA.
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FIG. 5. Cell surface expression of RV G (A) and Western blot analysis of RV M (B) in NA cells either uninfected or infected with the chimeric viruses SN-BM, SN-BG, and SN-BMBG or with the parental viruses SN and SB at an MOI of 5 for 48 h. (A) Cells were incubated with rabbit anti-RV G polyclonal antibody followed by Alexa 488-conjugated anti-rabbit IgG. Surface expression was assessed by flow cytometry, and results were analyzed using FlowJo software. (B) Cells were subjected to Western blot analysis as described in Materials and Methods. RV M was detected using polyclonal rabbit antibody against RV M followed by Alexa Fluor 555-anti-rabbit IgG. Actin, which was detected with a polyclonal rabbit antibody against mouse actin, served as a loading control. MW indicates molecular mass markers. Proteins were visualized using a molecular imager.
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FIG. 6. Spread of the chimeric viruses SN-BM, SN-BG, and SN-BMBG and the parental viruses SN and SB in Vero cells. Cells were infected at an MOI of 0.01 and overlaid with semisolid agar. At the indicated times, the agar overlay was removed and the cells were fixed with 80% acetone and stained with FITC-labeled anti-RV N antibody. Fluorescent foci were captured, and the size of each focus was calculated using Spot advanced software. Each bar represents means (± SE) of results for 30 foci. Asterisks indicate significant differences (P < 0.001).
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FIG. 7. (A) Schematic of chimeric recombinant SN-BG NCD, which contains the ectodomain and transmembrane domain of SB on the backbone of the SN parental virus. The number 461 indicates the position of the amino acid in G where the CD begins. LS, leader sequence; TS, trailer sequence; , pseudogene. (B) Single-step growth curves of the chimeric and parental recombinant viruses in NA cells. Data are the means (± SE) of results from three independent experiments. FFU, focus-forming units. (C) Spread of the recombinant viruses in Vero cells. Data are the mean areas (± SE) for 30 foci. The asterisk indicates a significant difference (P < 0.05).
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The regulation of viral replication appears to be one of the important mechanisms involved in RV pathogenesis. To evade the immune response and to preserve the integrity of the neuronal network, pathogenic RV strains, but not attenuated strains, can downregulate their growth rate. An analysis of viral growth kinetics revealed that the chimeric virus SN-BG replicated at a rate
100 times lower than that of SN. Furthermore, a quantitative analysis of viral RNA synthesis showed that the rate of viral transcription and replication in SN-BG-infected cells was significantly lower than that in SN-infected cells, suggesting that RV G regulates viral growth at the RNA level; this result was consistent with our previous finding that the dominance of a nonpathogenic RV G over a pathogenic RV G is regulated at the level of RNA synthesis (8). Moreover, we found that the rate of viral RNA synthesis was significantly lower in cells infected with the more pathogenic SN-BMBG than in cells infected with the less pathogenic SN-BG. The lowest levels of viral RNA synthesis were detected in cells infected with SB, the most pathogenic RV, whereas SN-BM, which was completely nonpathogenic after peripheral infection, produced the highest levels of viral RNA. These data are in accord with previous reports that the viral replication rate in tissue culture correlates inversely with pathogenicity (8, 10, 24).
The variations in the rates of viral RNA synthesis observed with the different RVs were reflected in the expression of RV G and RV M. Like the rate of viral RNA transcription, the amounts of RV G or RV M as determined by fluorescence-activated cell sorter analysis or Western blot analysis, respectively, correlated inversely with virus pathogenicity. The similar levels of G expression by SN-BG- and SN-BMBG-infected cells despite differences in the viral pathogenicity suggest that other parameters also play a role in RV pathogenesis. Indeed, viral spread assays showed that the chimeric virus bearing both RV M and G from the same strain spread more efficiently than a virus containing RV M or G from a different strain. Because the M of SN and that of SB have only 86% amino acid homology and because M interacts with RV G (22), it is possible that the G of SN does not interact sufficiently with the M of SB. In addition to interacting with G, M must interact efficiently with the RNP. Thus, the lower rate of cell-to-cell spread of SN-BMBG than of SN or SB may result from insufficient interaction between the SB M and the SN RNP.
The pathogenicity of SN-BG or SN-BMBG appears to correlate with the cell-to-cell spread rate. In this respect, it should be noted that on average, 45% of SN-BG-infected mice showing hind-limb paralysis recovered from the infection, suggesting that viral spread from the spinal cord to the brain was slow enough to allow clearance of the infection by host immune effectors before extensive virus replication in the brain. By contrast, 90 and 100% of mice that developed hind-limb paralysis after infection with SN-BMBG and SB, respectively, succumbed to the infection. The complete absence of paralysis or mortality in mice infected with SN, despite its efficient cell-to-cell spread activity, is likely due to the very high replication rate of this virus as well as to differences in receptor usage (3, 16) and the kinetics of virus uptake (5, 10).
The decrease in the level of cell-to-cell spread activity of SN-BG compared to that of SN-BMBG may result from the CD of SB G, which has only 57% amino acid homology to the CD of the SN G. However, while the cell-to-cell spread activity of SN-BG NCD, in which the CD of the SB G was replaced by the CD of the SN G, was increased compared to that of SN-BG, it was still significantly lower than the spread activity of SN-BMBG, suggesting that the entire G protein rather than only the G CD structure participates in the cell-to-cell spread. This conclusion is consistent with results from studies of vesicular stomatitis virus which indicate that a specific CD amino acid sequence is not required for efficient virus budding (27).
RVs use several strategies to evade the host immune responses and to successfully complete their life cycle. To avoid early recognition by immune effectors, a pathogenic RV must regulate its replication and antigen expression to the lowest possible level. This downregulation in turn preserves the integrity of the neuronal structure and function and allows efficient virus spread into and within the central nervous system. The RV M and RV G genes appear to play a significant role in the regulation of virus replication and, thus, in RV pathogenesis.
We have no conflicts of interest with this publication.
Published ahead of print on 19 December 2007. ![]()
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